Visualization

The visualization module contains functions for data presentation but also for data insepction and quality control.

• Annotation
  • i_lolli_plot()
  • i_mirror_lolli_plot()
  • isequence_logo()
  • ptm_lolli_plot()
  • ptm_mirror_lolli_plot()
  • sequence_logo()
  • vis_psites()
• Basic visualization functions
  • UpSetGrouped
  • boxplot()
  • corr_map()
  • correlogram()
  • ima_plot()
  • intensity_rank()
  • ivolcano()
  • log_int_plot()
  • ma_plot()
  • mean_sd_plot()
  • plot_traces()
  • prob_plot()
  • pval_hist()
  • ratio_plot()
  • venn_diagram()
  • volcano()
• Visualization of Quality Control Metrics
  • charge_plot()
  • count_mod_aa()
  • icharge_plot()
  • icount_mod_aa()
  • isty_count_plot()
  • sty_count_plot()