Preprocessing

The preprocessing module is used to perform initial data transformation and quality control on the data.

• Transformations
  • Module Name: transformation
  • calculate_iBAQ()
  • collapse_rows()
  • exp_semi_col()
  • expand_site_table()
  • log()
  • make_sim_score()
  • merge_semi_cols()
• Normalization
  • cyclic_loess()
  • loading_norm()
  • norm_to_prot()
  • quantile_norm()
  • vsn()
• Imputation
  • dima()
  • imp_median()
  • imp_min_prob()
  • imp_seq()
• Filtering
  • cleaning()
  • filter_loc_prob()
  • filter_seq_cov()
  • filter_vv()
  • remove_non_quant()
• Data handling
  • download_from_ftp()
  • fetch_from_pride()
  • read_csv()
  • to_csv()
• Seqeunce annotation for data preprocessing
  • annotate_phosphosite()
  • get_subcellular_loc()
  • go_annot()
  • motif_annot()
  • to_canonical_ps()